High Protein Chia Seed Lemon Cake

Posted on August 16, 2025.

Chia Seed Lemon Cake

If you’re looking for a dessert that tastes amazing and supports your nutrition goals, this chia seed lemon cake is it. It’s light, fluffy, and filled with bright lemon flavor. Each slice packs a punch of protein to keep you satisfied, whether you’re enjoying it for breakfast, as a snack, or post-workout.

What sets this cake apart is its flexibility. You can make it with four different protein sources depending on what you have on hand or your dietary preferences. It’s a healthy, zesty treat that doesn’t sacrifice flavor for function.

This chia seed lemon cake is more than a dessert. It’s a smart, delicious way to add protein to your day while still enjoying something that feels like a treat. Whether you follow a gluten-free lifestyle, want to avoid protein powders, or just want something new, this is the only recipe you’ll need.

Table of Contents

Why This is the Best Lemon Protein Cake You’ll Ever Make

  • Moist and fluffy texture that rivals traditional cake
  • Packed with protein to help you stay full longer
  • Perfect for breakfast, snacks, or healthy desserts
  • Flexible recipe with four protein options to match your needs
  • Wholesome ingredients with options for gluten-free and low-carb diets
  • Easy to prepare, even if you’re short on time
  • Balanced sweetness with a fresh lemon zing
  • No weird aftertaste, even when using protein powders

This chia seed lemon cake delivers taste, nutrition, and convenience in one simple recipe. It’s a cake that works hard for your goals without feeling like a compromise.

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“Chia seeds are tiny nutritional powerhouses, rich in fiber, protein, and omega-3s. They may help lower cholesterol, regulate blood sugar, and support heart and digestive health.” Harvard T.H. Chan School of Public Health

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Front view of Chia Seed Lemon Cake with frosting

Ingredients Needed

For the Cake Base

  • 1 and ½ cups white whole wheat flour
  • 1 teaspoon baking soda
  • ½ teaspoon kosher salt
  • ½ cup olive oil, extra-light for a neutral taste
  • 1 cup granulated sugar
  • ½ teaspoon vanilla extract
  • 3 large eggs at room temperature
  • ½ cup plain Greek yogurt
  • 2 tablespoons chia seeds
  • 2 tablespoons fresh lemon juice
  • 1 tablespoon finely grated lemon zest

For the Glaze

  • 1 cup powdered sugar
  • 2 tablespoons fresh lemon juice
  • ½ teaspoon finely grated lemon zest

This ingredient list combines fresh citrus flavor with the nutritional boost of chia seeds. Together, they create a moist and flavorful chia seed lemon cake that feels indulgent but supports your health goals.

How to Make Chia Seed Lemon Cake

Step 1: Preheat the Oven
Set your oven to 350°F (177°C). Lightly grease a 9-by-5-inch loaf pan using olive oil or nonstick spray to prevent sticking.

Step 2: Prepare the Yogurt Mix
In a small bowl, stir together Greek yogurt, chia seeds, 2 tablespoons of lemon juice, and 1 tablespoon of lemon zest. Let this mixture sit while you prepare the other components. This step allows the chia seeds to begin absorbing moisture.

Step 3: Combine the Dry Ingredients
In a medium mixing bowl, whisk the flour, baking soda, and salt until well blended. This ensures even distribution throughout the batter.

Step 4: Whip the Sugar and Oil
Using a hand mixer or stand mixer on high speed, beat the olive oil and granulated sugar until the mixture looks light and smooth. This step should take about 4 minutes. Stir in the vanilla extract.

Step 5: Add the Eggs
Crack the eggs in one at a time, mixing well after each addition. Scrape the sides of the bowl to keep everything smooth and consistent.

Step 6: Build the Batter
Switch to low speed. Add the dry ingredients in three stages, alternating with the yogurt-chia mixture in two stages. Start and end with the dry mix. Mix just until combined. Overmixing can make your chia seed lemon cake dense.

Step 7: Bake the Cake
Pour the batter into the prepared loaf pan. Smooth the surface with a spatula. Bake in the center of the oven for 40 to 45 minutes or until a toothpick inserted in the center comes out clean. The cake should feel springy and the top golden.

Step 8: Cool It Down
Let the cake rest in the pan for 10 minutes. Then, remove it and place it on a wire rack to cool completely before glazing.

Step 9: Make the Glaze
In a small bowl, whisk together powdered sugar, 2 tablespoons lemon juice, and ½ teaspoon lemon zest. Adjust the consistency by adding more sugar or juice as needed until it forms a pourable glaze.

Step 10: Finish and Serve
Drizzle the glaze over the cooled chia seed lemon cake. Let it set before slicing. Enjoy your high-protein, lemony treat any time of day.

Glazed lemon cake on baking paper

Equipment Used

Thick slice of chia seed lemon cake with icing
Anne Newgent

Chia Seed Lemon Cake

A fluffy, protein-packed chia seed lemon cake with zesty flavor, moist texture, and four easy protein boost options for a healthy and satisfying treat.
Prep Time 15 minutes
Cook Time 45 minutes
Total Time 1 hour
Servings: 10 slices
Course: Dessert, Snack
Cuisine: American
Calories: 321

Ingredients
  

Cake Base
  • 1.5 cups white whole wheat flour
  • 1 tsp baking soda
  • 0.5 tsp kosher salt
  • 0.5 cup extra-light olive oil for neutral taste
  • 1 cup granulated sugar
  • 0.5 tsp vanilla extract
  • 3 large eggs at room temperature
  • 0.5 cup plain Greek yogurt
  • 2 tbsp chia seeds
  • 2 tbsp fresh lemon juice
  • 1 tbsp lemon zest finely grated
Glaze
  • 1 cup powdered sugar
  • 2 tbsp fresh lemon juice
  • 0.5 tsp lemon zest finely grated

Method
 

  1. Preheat your oven to 350°F (177°C). Lightly grease a 9-by-5-inch loaf pan with olive oil or nonstick spray.
  2. In a small bowl, stir together the Greek yogurt, chia seeds, lemon juice, and lemon zest. Let sit to allow chia to absorb liquid.
  3. In a medium bowl, whisk together the flour, baking soda, and salt until well combined.
  4. In a separate bowl, use a hand or stand mixer to beat olive oil and sugar on high for about 4 minutes until smooth. Stir in vanilla.
  5. Add the eggs one at a time, beating well after each. Scrape down the sides of the bowl as needed.
  6. On low speed, add the dry ingredients in three additions, alternating with the yogurt-chia mix in two additions, starting and ending with the dry mix.
  7. Pour batter into the prepared loaf pan. Smooth the top and bake for 40–45 minutes or until a toothpick comes out clean.
  8. Cool in the pan for 10 minutes, then transfer to a wire rack to cool completely.
  9. In a small bowl, whisk together glaze ingredients until smooth. Adjust consistency as needed.
  10. Drizzle the glaze over the cooled cake. Let set before slicing and serving.

Notes

For extra protein, use collagen, whey/vegan protein powder, blended cottage cheese, or increase the Greek yogurt. To make gluten-free, substitute 1:1 GF flour blend with xanthan gum. For a vegan version, use chia eggs and plant-based yogurt.

Nutrition Facts (Per Serving)

Calories:321 kcal|16% | Carbohydrates:47 g|16% | Protein:6 g|12% | Fat:13 g|20% | Saturated Fat:2 g|10% | Cholesterol:56 mg|19% | Sodium:170 mg|7% | Potassium:72 mg|2% | Fiber:3 g|12% | Sugar:32 g|36% | Vitamin A:81 IU|2% | Vitamin C:4 mg|5% | Calcium:47 mg|5% | Iron:1 mg|6%
Nutrition Disclaimer
Nutritional information provided is an estimate and may vary based on the products and brands you use. Calculate the actual nutrition values using your preferred nutrition calculator and the exact ingredients you choose.

Four Ways to Add Protein to Your Lemon Cake 

Option 1: Using Collagen Powder

 Collagen is a flavorless, heat-stable protein that mixes easily into batter. It dissolves without changing texture or taste, making it a great choice for those who want a subtle protein boost. Simply add two to three tablespoons to your dry ingredients when preparing your chia seed lemon cake. 

Option 2: Using Whey or Vegan Protein Powder

 Whey and plant-based protein powders work well but tend to absorb more liquid. Choose vanilla flavor for best results and reduce the flour slightly or add an extra tablespoon of yogurt to balance moisture. This keeps the chia seed lemon cake soft and prevents it from becoming dry. 

Option 3: Using Greek Yogurt

Greek yogurt naturally boosts protein while keeping the cake extra moist. It blends smoothly and adds a light tang that pairs well with lemon. This is already built into the base recipe for the chia seed lemon cake

Option 4: Using Blended Cottage Cheese

Blended cottage cheese gives the cake a creamy texture and a high-protein profile using whole food ingredients. Blend until smooth before adding to the wet mixture. It’s a smart choice for those avoiding powders and wanting real food in their chia seed lemon cake.

Iced lemon cake loaf with chia and zest

Pro-Tips for a Flawless Cake

  • Avoid Overmixing the Batter
    Overmixing can make your chia seed lemon cake dense and heavy. Mix just until everything is combined to keep the texture light and fluffy.
  • Use Room Temperature Ingredients
    Cold eggs or yogurt can make the batter curdle or mix unevenly. Let them sit out for about 20 minutes before using to help the batter come together smoothly.
  • Measure Flour Properly
    Spoon flour into your measuring cup and level it with a knife. Scooping directly from the bag packs in too much and can dry out your chia seed lemon cake.
  • Let the Chia Seeds Soak
    Allowing chia seeds to sit in the yogurt and lemon juice gives them time to swell. This improves the cake’s texture and helps bind everything without needing extra eggs.
  • Test with a Toothpick
    To know when the cake is done, insert a toothpick into the center. If it comes out clean, your chia seed lemon cake is ready to cool.

Variations and Toppings

Lemon Blueberry Version
Add a burst of fruity flavor by gently folding in one cup of fresh or frozen blueberries just before pouring the batter into the pan. The berries pair perfectly with the lemon and chia for a refreshing twist on your chia seed lemon cake.

Healthy Lemon Glaze
For a lighter topping, mix plain Greek yogurt with a powdered sugar substitute and a bit of lemon juice. This creates a creamy glaze that complements the tartness of the cake while boosting the protein.

Add Crunchy Toppings
Before baking, sprinkle the top of your batter with sliced almonds or unsweetened coconut flakes. These toppings add a crisp finish and a nice contrast to the soft texture of the chia seed lemon cake.

Top view of glazed chia seed lemon loaf

How to Store and Freeze Your Protein Cake

Storing at Room Temperature
Keep your chia seed lemon cake covered in an airtight container on the counter for up to three days. Make sure it’s fully cooled before storing to prevent moisture buildup.

Refrigerating for Longer Freshness
If you want to extend its shelf life, place the cake in the refrigerator. Wrap it tightly with plastic wrap or store it in a sealed container. It will stay fresh for up to one week while maintaining its flavor and texture.

Freezing for Meal Prep or Future Use
Slice the chia seed lemon cake and wrap individual pieces in parchment paper. Store the slices in a freezer-safe bag or container. You can freeze them for up to two months. To enjoy, let a slice thaw at room temperature or microwave it for about 20 seconds.

Two slices of chia lemon cake with icing

Frequently Asked Questions (FAQ)

Can I make this cake gluten-free?

Yes, you can substitute the white whole wheat flour with a 1-to-1 gluten-free baking flour. Make sure it includes xanthan gum to maintain the structure of your chia seed lemon cake

How can I make this recipe vegan?

Replace the eggs with chia eggs by mixing one tablespoon of chia seeds with three tablespoons of water per egg. Let it sit for 10 minutes to gel. Also, use a plant-based yogurt to keep your chia seed lemon cake dairy-free and vegan-friendly. 

What do chia seeds do in baking?

Chia seeds absorb liquid and form a gel-like texture, which helps keep baked goods moist. In this chia seed lemon cake, they also add fiber, protein, and healthy fats without changing the flavor. 

Why did my cake turn out dense or dry? 

Overmixing, using too much flour, or not enough liquid can lead to a dry or dense cake. Always spoon and level your flour and avoid overbeating the batter to keep your chia seed lemon cake light and tender. 

Can you put chia seeds in lemon cake?

Absolutely. Chia seeds work well in lemon cake by adding texture and nutrition. They blend into the batter and enhance the moisture of your chia seed lemon cake

What not to mix with chia seeds?

 Avoid mixing chia seeds directly into very thick or dry mixtures without giving them time to absorb liquid. They need moisture to expand properly and do their job in the chia seed lemon cake.

 What does adding chia seeds to baking do?

Chia seeds help retain moisture, bind ingredients, and add nutritional value. They also contribute a pleasant texture and make your chia seed lemon cake more satisfying.

 Is it okay to mix lemon and chia seeds together?

Yes, lemon and chia seeds go perfectly together. Lemon adds bright flavor while chia seeds bring a nutritional boost, making your chia seed lemon cake both tasty and wholesome.

Medical Disclaimer

The information on this website is for informational purposes only and is not intended to be a substitute for professional medical advice, diagnosis, or treatment. Always seek the advice of your physician or other qualified health provider with any questions you may have regarding a medical condition. This includes any dietary changes or the use of ingredients in recipes such as this chia seed lemon cake.

Final Thoughts

If you’re searching for a dessert that feels indulgent but supports your nutrition goals, this chia seed lemon cake delivers. It’s fluffy, bright, high in protein, and incredibly adaptable. Whether you prefer collagen, protein powder, yogurt, or cottage cheese, this recipe lets you choose what works best for you.

Try the recipe, and if you enjoy it, please leave a comment and a star rating. Sharing your experience helps others discover it too.

Love baking with chia seeds? Share your favorite variation or topping in the comments. What’s your go-to twist on a chia seed lemon cake? Let us know below!

Anne Newgent

High-Protein Nutrition Specialist and Wellness Advocate with over a decade of experience.
My human-first approach blends science-backed guidance with real-life empathy, shaped by my own journey through fatigue and muscle loss. Today, I help people reclaim strength, energy, and confidence through high-protein nutrition that’s both practical and empowering.

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